PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_1C4870CDE.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 144aa MW: 16020.6 Da PI: 4.6146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_1C4870CDE.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.2	8.7e-13	1	49	38	85
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 m e+gf++sp+qC++k+++lnkryk++ e +++ +++++ + +++d + Traes_3AS_1C4870CDE.1 1 MVEKGFKVSPQQCEDKFNDLNKRYKRVVELLGRGtACNVVANPALLDAM 49 679******************************9459999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-10	1	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVEKGFKVSP QQCEDKFNDL NKRYKRVVEL LGRGTACNVV ANPALLDAMG ELTAKAKEEA 60 RKLLSSKRLF FREMCNYHNP GGTATASHGT QGGRQVVNFS TRSEDDSEDD VLSSKEAEEE 120 DDDYDLDDVE EKAPGTKRSD GRID

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-142	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163766.1	3e-67	uncharacterized protein LOC109749193
TrEMBL	A0A3B6EBZ1	5e-99	A0A3B6EBZ1_WHEAT; Uncharacterized protein
STRING	Traes_3AS_1C4870CDE.1	1e-102	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-36	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]