PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_496047B73.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-X1
Protein Properties Length: 886aa    MW: 97943 Da    PI: 8.4664
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_496047B73.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.55.2e-07351370119
               zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                            CG+HkC + CH+GpC++ C+
  Traes_3AS_496047B73.2 351 CGRHKCPERCHRGPCDVtCR 370
                            *****************9*7 PP
2zf-NF-X117.21.1e-05404421118
               zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                            CG+H C++ C+ G+CppC
  Traes_3AS_496047B73.2 404 CGRHACKRRCCVGDCPPC 421
                            ****************** PP
3zf-NF-X120.88.5e-07431450120
               zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                            CG+HkC ++CH+G C pCp+
  Traes_3AS_496047B73.2 431 CGNHKCLSPCHRGACSPCPL 450
                            ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359091141IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.05291142IPR001841Zinc finger, RING-type
SMARTSM004380.008191209IPR000967Zinc finger, NF-X1-type
PfamPF014220.012192208IPR000967Zinc finger, NF-X1-type
CDDcd060081.12E-7234282No hitNo description
SMARTSM004380.025244263IPR000967Zinc finger, NF-X1-type
PfamPF014220.019246261IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-7287327No hitNo description
SMARTSM004380.0092297316IPR000967Zinc finger, NF-X1-type
PfamPF014220.19297315IPR000967Zinc finger, NF-X1-type
CDDcd060083.04E-9341390No hitNo description
SMARTSM004380.0023351371IPR000967Zinc finger, NF-X1-type
PfamPF014224.4E-4351370IPR000967Zinc finger, NF-X1-type
CDDcd060081.86E-8394442No hitNo description
SMARTSM004380.013404423IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022404421IPR000967Zinc finger, NF-X1-type
CDDcd060081.47E-10421469No hitNo description
SMARTSM004380.0083431450IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-5431449IPR000967Zinc finger, NF-X1-type
SMARTSM0043825494509IPR000967Zinc finger, NF-X1-type
PfamPF014225.5498508IPR000967Zinc finger, NF-X1-type
SMARTSM00438140517562IPR000967Zinc finger, NF-X1-type
PfamPF0142219517526IPR000967Zinc finger, NF-X1-type
SMARTSM0043894599638IPR000967Zinc finger, NF-X1-type
PfamPF014221.1599609IPR000967Zinc finger, NF-X1-type
SMARTSM004380.52651669IPR000967Zinc finger, NF-X1-type
PfamPF0142211651668IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44714735IPR000967Zinc finger, NF-X1-type
PfamPF014220.45716728IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
RKPAPFTTAT ATTRKPAPLT APAPPPPNPS HVSDSDPSSY SSSGEETDLS ACDPATASVL  60
STYLSVAGNG ADLSKVGIFL NSAARRRSPP CLICLDPIRP SDPVWSCSAS CFALLHLPCI  120
QSWAHQSASA APSPTWGCPK CRVAYPKSQT PTSYHCFCSK TEDPPADPWI LPHSCGDVCG  180
RRLNSNPDSG CEHTCLLLCH PGPCPPCPAV VPNARCFCGA HREPRRCAHQ RYSCKGKCNK  240
RLSCELHRCP VDCHDGPCPP CAVRGNHKCE CGETMVERLC SESVFQCKRE CSGMLECGKH  300
RCERGCHGGK CGECPLRGQR TCPCGKKDYP RLECDVEAAT CGSTCEKVLG CGRHKCPERC  360
HRGPCDVTCR LVIKKSCRCG VLKKELPCHQ DLTCERKCQR LRACGRHACK RRCCVGDCPP  420
CAETCDRRLR CGNHKCLSPC HRGACSPCPL MKTISCFCGK TYFEVPCGTE KNQKPPKCSK  480
RCNIDRLCRH KLDCRPHKCH YGACPPCKLI CGEELSCGHK CKERCHGSIP PPNPEFTVKP  540
MKKKMEKHIE CTPGTPCPPC QEVVLVPCFG EHLGQERAIP CSKSRQFPCQ NLCGNLLHCG  600
NHYCTKDCHV LEIPSDQRKA DTILSLSRNN TLAEPCERCN LRCQRARDPP CSHPCPLRCH  660
LSDCLPCKVL VKKSCHCGAM THAFECVYYN NLNAKQQLKA RSCNGPCHRK LPNCPHLCSE  720
ICHPGQCPSV DQCMKKVNVR CACNTLKKEW VCQDVLKEYR RSGRDPKEVP KGQFGVGLLA  780
CGGDCVKKVN VSAAELHLRK VQETKSPAAE VTNVPKRRKK RDRGAQEPVQ VSMWQQIKWY  840
LVVIIALAGL VVLGLVIWKG VYQISDWMNE MEEQKARERL LRAGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188359.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A3B6EKD20.0A0A3B6EKD2_WHEAT; Uncharacterized protein
TrEMBLA0A446N9L60.0A0A446N9L6_TRITD; Uncharacterized protein
STRINGTraes_3AS_496047B73.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]