PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_6B2E2DE78.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 212aa    MW: 22912.9 Da    PI: 8.6956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_6B2E2DE78.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-091181027
                           GGTS--TTTTT-SS-SSS CS
                zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                           ++tGtCk+G++Ck++H++
  Traes_3AS_6B2E2DE78.1  1 MKTGTCKFGSNCKYHHPK 18
                           89**************96 PP
2zf-CCCH41.32.6e-133863227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           ++++C+++++tG+Ck+G++CkF+H++
  Traes_3AS_6B2E2DE78.1 38 GEKECSYYMKTGQCKFGSTCKFHHPE 63
                           7899********************96 PP
3zf-CCCH29.81e-09191212122
                            --S---SGGGGTS--TTTTT-S CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCk 22 
                            +++++C++++rtG Ck+G++Ck
  Traes_3AS_6B2E2DE78.1 191 PGQPECQYYMRTGDCKFGATCK 212
                            5789*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035621118IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8123664IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-63663IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-113863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-63963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-54262IPR000571Zinc finger, CCCH-type
SMARTSM003561.2190212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.958190212IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7192212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH  60
HPEFGGVPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VVPGSYMPGS YTPMMLSSGM  120
IPLQGWSPYP ASVNPVASGG VQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN  180
NQQEHGFPER PGQPECQYYM RTGDCKFGAT CK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.11e-150zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_020200472.11e-150zinc finger CCCH domain-containing protein 6-like isoform X2
SwissprotQ5NAW21e-136C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A446NCV41e-152A0A446NCV4_TRITD; Uncharacterized protein
STRINGTraes_3AS_6B2E2DE78.11e-153(Triticum aestivum)
STRINGTraes_3DS_162123F0C.21e-152(Triticum aestivum)
STRINGTRIUR3_35231-P11e-151(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.18e-61C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]