PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_82DEC629B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 161aa MW: 17878.2 Da PI: 9.5247

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_82DEC629B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.2	5.5e-22	2	76	22	87
H.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 22 faeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ + Traes_3AS_82DEC629B.1 2 HAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCSAY 76 56666665554444334458899***********************************************96543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-25	1	95	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0015	1	89	IPR003340	B3 DNA binding domain
CDD	cd10017	7.27E-18	1	71	No hit	No description
PROSITE profile	PS50863	12.167	1	90	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.9E-20	2	76	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.62E-20	2	87	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
QHAEKHFPLK RTPETTTTTG KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE 60 KGLGAGDSIV FSCSAYGQEK QFFIDCKKNK TMASCPADGG XXXXPPVAEA ANGEQVRVVR 120 LFGVDIAGEK RGRVAQAEQE LFKRQCVAHS QHSPALGAFV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	3e-33	1	99	34	130	DNA-binding protein RAV1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372082	1e-127	AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201133.1	1e-104	AP2/ERF and B3 domain-containing protein Os01g0141000-like
Refseq	XP_020201484.1	1e-104	AP2/ERF and B3 domain-containing protein Os01g0141000-like
Swissprot	Q0DXB1	4e-61	Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
Swissprot	Q9AWS0	2e-60	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	A0A3B6EDN4	1e-105	A0A3B6EDN4_WHEAT; Uncharacterized protein
TrEMBL	A0A446N2Q9	1e-105	A0A446N2Q9_TRITD; Uncharacterized protein
STRING	Traes_3AS_82DEC629B.1	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	2e-36	related to ABI3/VP1 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]