PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_88AAED4BB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 210aa    MW: 23506.7 Da    PI: 9.9546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_88AAED4BB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.5e-075375123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C++Cgk F r  nL+ H r H
  Traes_3AS_88AAED4BB.1 53 YVCEICGKGFQRDQNLQLHRRGH 75
                           9********************88 PP
2zf-C2H210.90.0014130152123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C k++  +s+ k H +++
  Traes_3AS_88AAED4BB.1 130 WKCDKCAKRYAVQSDWKAHSKVC 152
                            58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-85275No hitNo description
PROSITE profilePS5015711.8015375IPR007087Zinc finger, C2H2
SMARTSM003550.00695375IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-65375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM003554095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5118150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-8125150No hitNo description
SMARTSM00355210130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSNLTSASGD QTSVSSHPLP PPSKKKRSLP GNPDPDAEVI ALSPRALMAT NRYVCEICGK  60
GFQRDQNLQL HRRGHNLPWK LKQRNPNEVV RKKVYVCPEP GCVHHDRSRA LGDLTGIKKH  120
FSRKHGEKKW KCDKCAKRYA VQSDWKAHSK VCGTREYRCD CGTLFSRRDS FITHRAFCDA  180
LAEESARAVA VEEQQHPGML YSHGGGGAAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35126191368Zinc finger protein JACKDAW
5b3h_F2e-35126191368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17992KLKQRNPNEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164353.11e-149protein indeterminate-domain 7-like
SwissprotQ8H1F51e-110IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3B6EBU31e-157A0A3B6EBU3_WHEAT; Uncharacterized protein
TrEMBLA0A446N6881e-157A0A446N688_TRITD; Uncharacterized protein
STRINGTraes_3AS_88AAED4BB.11e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-99indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]