PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_8F85243EB.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 211aa    MW: 23340.8 Da    PI: 9.4051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_8F85243EB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-083281554
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           ++e E+ RR++++   e+L +l+Pk + ++++  ++    L  A  YIk+L
  Traes_3AS_8F85243EB.2 32 KKESEKERRQHMKRLCEKLSSLIPKeD-NPHADTMTQLGSLDVAASYIKKL 81
                           6899*********************66.556666***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2582781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-53281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-53285No hitNo description
Gene3DG3DSA:4.10.280.102.7E-123297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-103298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-43387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEVKAKPARG GKRTRASSGT AGVPTAKVLM EKKESEKERR QHMKRLCEKL SSLIPKEDNP  60
HADTMTQLGS LDVAASYIKK LKERVDELQR KKTSAQAMAT LRRVSDISMP TTTITTSSGA  120
GSLEGDKYLD ASPTVVEVRQ PDDSSMDVRL ICSTEKPIKL HEVITIHEEE GADIVNANHS  180
VAGHKIFYTI HSRVRTYIGI VTYISILFCI C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17991KLKERVDELQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-148HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183665.11e-122uncharacterized protein LOC109769324
TrEMBLA0A446N1221e-152A0A446N122_TRITD; Uncharacterized protein
STRINGTraes_3AS_8F85243EB.21e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-09bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]