PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_9079D6B71.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 158aa MW: 17980.8 Da PI: 8.4986

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_9079D6B71.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	22	81	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k Traes_3AS_9079D6B71.1 22 RQRWTPTQMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSK 81 89***************99***********************************98 PP
2	Wus_type_Homeobox	101	8.6e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR++ kq Traes_3AS_9079D6B71.1 21 ARQRWTPTQMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKWKQ 84 789**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-16	16	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.188	18	83	IPR001356	Homeobox domain
SMART	SM00389	9.1E-14	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-18	21	86	IPR009057	Homeodomain-like
CDD	cd00086	1.19E-12	22	84	No hit	No description
Pfam	PF00046	4.5E-19	22	81	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSLDNLYCDP LMVHGGHKIT ARQRWTPTQM QLQILENIFD QGNGTPSKQK IKDITAELSQ 60 HGQISETNVY NWFQNRRARS KWKQAASSLP NNAESEAEGD EESLTDKKPR SDGSQQQNMA 120 VRAHNPERIS EMHRHFDAAE RGQVRGPKMY GSSNDSSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKWKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-100	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-68	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A446PF87	1e-107	A0A446PF87_TRITD; Uncharacterized protein
STRING	Traes_3AS_9079D6B71.1	1e-116	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-42	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]