PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_D1FC86E9B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 99aa    MW: 11174.5 Da    PI: 9.5962
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_D1FC86E9B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.47.6e-251562451
                 RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                           ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ks
  Traes_3AS_D1FC86E9B.1 15 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKVKS 62
                           6899*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.903183IPR003035RWP-RK domain
PfamPF020421.1E-221662IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
PQPQAQAQIK PTRVSLSYEE ISKLFSLPIA EAASILGVCT SVLKRICRTH GIVRWPYRKV  60
KSCLFCGWFV KSVSCLATVA LMFIYCMLKC TFSPGYMYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-87HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153379.16e-37uncharacterized protein LOC109738702
TrEMBLA0A453EL953e-36A0A453EL95_AEGTS; Uncharacterized protein
TrEMBLR7WBV34e-36R7WBV3_AEGTA; Uncharacterized protein
STRINGTraes_3AS_D1FC86E9B.11e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.15e-12Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]