PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_D8AE0A149.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 90aa    MW: 9659.57 Da    PI: 4.6885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_D8AE0A149.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-131335385
                           EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkld 85
                           +++s++yvltkGW++Fvk+ gL++gD+v F+++
  Traes_3AS_D8AE0A149.1  1 WNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 33
                           799****************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.01E-8133No hitNo description
PROSITE profilePS5086310.489151IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-11136IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-10133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-12150IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA  60
ISNENETGHV AVKLFGVDIA GGGMVGSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1515471121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-141HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191027.12e-48putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS73e-24Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A446N2L63e-58A0A446N2L6_TRITD; Uncharacterized protein
STRINGTraes_3AS_D8AE0A149.12e-59(Triticum aestivum)
STRINGTRIUR3_33405-P12e-58(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3711133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-18related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]