PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_E65C48107.1
Common NameTRAES_3BF059600070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 53aa    MW: 5982.65 Da    PI: 9.3673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_E65C48107.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131353141
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                           +g W++eEde+l+  ++++G  tW+++a+  g++R++k+c+
  Traes_3AS_E65C48107.1 13 KGLWSPEEDERLYTRITRHGVSTWSSVAQLAGLRRSGKSCR 53
                           678*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.12853IPR017930Myb domain
SuperFamilySSF466892.8E-101053IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-131253IPR009057Homeodomain-like
PfamPF002494.4E-111353IPR001005SANT/Myb domain
CDDcd001671.84E-61653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
DVGGEVEAHK ERKGLWSPEE DERLYTRITR HGVSTWSSVA QLAGLRRSGK SCR
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-69HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183575.16e-30myb-related protein 305-like
SwissprotP200271e-15MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3B6EF321e-28A0A3B6EF32_WHEAT; Uncharacterized protein
TrEMBLA0A3B6GR811e-28A0A3B6GR81_WHEAT; Uncharacterized protein
TrEMBLA0A446N5J61e-28A0A446N5J6_TRITD; Uncharacterized protein
TrEMBLA0A453E3661e-28A0A453E366_AEGTS; Uncharacterized protein
TrEMBLA0A453E3A23e-30A0A453E3A2_AEGTS; Uncharacterized protein
STRINGTraes_3AS_E65C48107.19e-31(Triticum aestivum)
STRINGTraes_3B_3431FB444.13e-29(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2112166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-17myb domain protein 67
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]