PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_1DF60D14E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 238aa    MW: 24797.9 Da    PI: 9.7858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_1DF60D14E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.1e-0744113355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC....................TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkas.................kapskKlsKaeiLekAveYIksLq 55 
                           +  +e+E++RR +++    +L +llP +s                 + ++   +  + L  A  YI++L+
  Traes_3B_1DF60D14E.1  44 MERKEVEKNRRLHMKGLCLKLSSLLPASSsdhhlrhystsssssppSSSKDAATQLDQLDSAAAYINQLR 113
                           56789**********************666**************85555555****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.06441112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.51E-843125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-943123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKSRRQNGRG GAAAGAMALD GSHHTTSSGC GAGGVGGGGG CSKMERKEVE KNRRLHMKGL  60
CLKLSSLLPA SSSDHHLRHY STSSSSSPPS SSKDAATQLD QLDSAAAYIN QLRGRIDDLK  120
RRKQAALSGG CSSSVSAGDY KPQTTASLPV IEVRHQDGTL DVALASEAGR PFRLHEVMAV  180
LEQEGAEVIS ASFSVVGDKI FYTVHSQALC PRIGLDAGRV AQRLRGLAAA ATVSSLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-121HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201035.11e-124uncharacterized protein LOC109786888
TrEMBLA0A3B6FEX51e-170A0A3B6FEX5_WHEAT; Uncharacterized protein
TrEMBLA0A446P8511e-170A0A446P851_TRITD; Uncharacterized protein
STRINGTraes_3B_1DF60D14E.11e-171(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-18bHLH family protein