PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3B_3142C10C9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 246aa MW: 26458.5 Da PI: 9.3724

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3B_3142C10C9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.9	1.7e-08	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+ + ++ ++e +e+++ +gLt +qV+ +F +R++ +k Traes_3B_3142C10C9.1 71 KKPRDLLNPKAVNSMQSLFAVKDTLGKRETREISALCGLTVTQVREFFASQRTRVRK 127 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.815	68	128	IPR001356	Homeobox domain
SMART	SM00389	4.7E-5	70	132	IPR001356	Homeobox domain
CDD	cd00086	1.20E-5	71	127	No hit	No description
Pfam	PF00046	5.9E-6	71	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-8	71	131	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-7	71	135	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MELAPFKPAA GALVEWGGAG SIPAMVAAQQ QQLHAQADQL QRLVVAQCRL TGVNPLAQEM 60 AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET REISALCGLT VTQVREFFAS 120 QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTALKLEAS KTATNICSLN TEQTPLDIET 180 HAQVVEPLST LEPLEMFQSS SQLAEAPQSS LQQPEVQQCT ATPIPVTPTG TIQPTDAKIN 240 PDSVQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360732	0.0	AK360732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124E18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179217.1	1e-145	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A446QCH5	1e-173	A0A446QCH5_TRITD; Uncharacterized protein
STRING	Traes_3B_3142C10C9.1	1e-177	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-45	HB-other family protein