PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3B_4BDC314A1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 188aa MW: 19367.6 Da PI: 6.2358

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3B_4BDC314A1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	52	2.1e-16	9	57	52	100
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el+++++e Traes_3B_4BDC314A1.1 9 XQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHTE 57 68******************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.789	1	58	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-14	9	55	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
PSCSTSCRXQ REDAVSSLAY EAEARVKDPV YGCVGAISVL QRQVHRLQKE LDAAHTELLR 60 YACGELGGIP TALPVVTASI PTGRLSSAAM PCPGQLAGGM YSGGSGGGFR RLGLVDAIVP 120 QPPLSAGCFY NMRSSNNAGG SVAAEVAPVQ IPYASMANWA VNAISTITTT SGSESIVMDH 180 KEGGDSSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	10	78	63	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	10	78	63	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM461855	0.0	HM461855.1 Triticum turgidum subsp. durum LOB family transfactor Ramosa2.1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171773.1	1e-126	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_020171774.1	1e-126	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	1e-24	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A3B6FHB9	1e-126	A0A3B6FHB9_WHEAT; Uncharacterized protein
TrEMBL	A0A446PEP7	1e-126	A0A446PEP7_TRITD; Uncharacterized protein
TrEMBL	D9MPF3	1e-126	D9MPF3_TRITD; LOB family transfactor Ramosa2.1
STRING	Traes_3B_4BDC314A1.1	1e-134	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-25	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]