PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_99CDB9674.1
Common NameTRAES_3BF075700010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 115aa    MW: 13169.3 Da    PI: 11.1821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_99CDB9674.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-1273114551
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 
                           h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY+
  Traes_3B_99CDB9674.1  73 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYV 114
                           8899********************95.....49999**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.24368115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1269114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-970115No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1171115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-1073114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-474114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEPAVVPASA FSRYARHLGA RRRPKPACGQ KMFKKSMSVL VKMQTAMRYS HQQHHFQQAS  60
AETELSSVNQ LQHMISERKR REKLNDSFQA LKTVLPPGSK KDKTSILITA REYVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERKRRE
27782RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-165HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.11e-75putative transcription factor bHLH041 isoform X1
RefseqXP_020164743.11e-75putative transcription factor bHLH041 isoform X2
TrEMBLA0A077RV461e-76A0A077RV46_WHEAT; Uncharacterized protein
TrEMBLA0A446PFT39e-77A0A446PFT3_TRITD; Uncharacterized protein
TrEMBLA0A446PI371e-76A0A446PI37_TRITD; Uncharacterized protein
STRINGTraes_3B_99CDB9674.11e-80(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-20bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]