PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_062F4B215.1
Common NameTRAES_3BF042000020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 94aa    MW: 10603 Da    PI: 8.5689
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_062F4B215.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.6e-142160242
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                           +kk CnC++skClk+YCeCfa+g +C+  C+C++C+N+ e+
  Traes_3DL_062F4B215.1 21 KKKCCNCRHSKCLKLYCECFASGIYCDG-CNCTNCFNNVEN 60
                           799*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-152060IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.6032194IPR005172CRC domain
PfamPF036381.0E-102257IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
KPESPKPRGR LYDGKDGTPT KKKCCNCRHS KCLKLYCECF ASGIYCDGCN CTNCFNNVEN  60
EVARREAIEA TLERNPDAFR PKIGSSPHTN RNNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1225841473Protein lin-54 homolog
5fd3_B9e-1225841473Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739831e-142AK373983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168106.18e-62protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD19e-43TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A287LMV23e-62A0A287LMV2_HORVV; Uncharacterized protein
STRINGTraes_3DL_062F4B215.13e-63(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-45Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]