PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_0F82AC8F0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 142aa    MW: 15744.7 Da    PI: 8.4879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_0F82AC8F0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-16343547
                           -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           ++eEd+ ++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  Traes_3DL_0F82AC8F0.1  3 SEEEDQMIISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 43
                           89****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.092148IPR017930Myb domain
PfamPF002491.4E-14243IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-13250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-19245IPR009057Homeodomain-like
SMARTSM007171.4E-10246IPR001005SANT/Myb domain
CDDcd001677.48E-13244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MYSEEEDQMI ISAHAIHGNK WASIAKLLVG RTDNAIKNHW NSTLRRRYCT GTRCTRSASA  60
EQPMREMSRA VSEERWPLSG PSSFSVMEVK EAPVQTVSES SAGALQIRDI NNCSTEAVDR  120
SYPVRPVATI GAFRPYSLGP AQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1725062110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644270.0FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165805.19e-98transcription factor MYB25-like
TrEMBLA0A453FXQ22e-96A0A453FXQ2_AEGTS; Uncharacterized protein
TrEMBLM7Y5701e-96M7Y570_TRIUA; Transcription factor MYB44
STRINGTraes_3DL_0F82AC8F0.11e-102(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-20myb domain protein 109
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]