PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_136F5F731.1

Common Name

TRAES_3BF041800040CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 79aa MW: 8591.55 Da PI: 6.2309

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_136F5F731.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	35	3.3e-11	1	27	71	97
NF-YB 71 latlGfedyveplkvylkkyrelegek 97 +atlGfe+yv+plk+yl+kyr++eg++ Traes_3DL_136F5F731.1 1 MATLGFEEYVDPLKIYLQKYRDMEGDS 27 89***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-7	1	37	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MATLGFEEYV DPLKIYLQKY RDMEGDSKLT SKSGEGSVKK DIIGAHSGAT SSNAQAMVQH 60 GAYAQGMGYM QPQYHNGDT

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009393	1e-131	BT009393.1 Triticum aestivum clone wlm96.pk037.k9:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182576.1	3e-52	nuclear transcription factor Y subunit B-2-like
Refseq	XP_020182577.1	3e-52	nuclear transcription factor Y subunit B-2-like
Swissprot	P25209	4e-37	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	A0A077S200	7e-51	A0A077S200_WHEAT; Uncharacterized protein
TrEMBL	A0A341SQ66	7e-51	A0A341SQ66_WHEAT; Uncharacterized protein
TrEMBL	A0A453FVI7	1e-50	A0A453FVI7_AEGTS; Uncharacterized protein
STRING	Traes_3B_924B78EE5.1	1e-51	(Triticum aestivum)
STRING	Traes_3DL_136F5F731.1	6e-52	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	8e-17	nuclear factor Y, subunit B10

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]