PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_37D040907.1
Common NameTRAES_3BF026400090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 47aa    MW: 5806.81 Da    PI: 10.671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_37D040907.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.71.5e-111243356
                           HHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 33 LAkklgLterqVkvWFqNrRakek 56
                           LA kl+L  rqV vWFqNrRa+ k
  Traes_3DL_37D040907.1  1 LAIKLKLRPRQVEVWFQNRRARTK 24
                           899*******************98 PP
2HD-ZIP_I/II735.9e-241473278
            HD-ZIP_I/II 32 lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78
                           la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+
  Traes_3DL_37D040907.1  1 LAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENR 47
                           799****************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000270124IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.604.3E-10133IPR009057Homeodomain-like
PfamPF000465.7E-9124IPR001356Homeobox domain
PROSITE profilePS5007112.131126IPR001356Homeobox domain
CDDcd000865.73E-5127No hitNo description
SuperFamilySSF466893.7E-10135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 47 aa     Download sequence    Send to blast
LAIKLKLRPR QVEVWFQNRR ARTKLKHTEM ECEYLKRCFG SLTEENR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457274e-56AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154762.17e-27homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-26HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-26HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A453F4801e-25A0A453F480_AEGTS; Uncharacterized protein
TrEMBLA0A453F4A22e-25A0A453F4A2_AEGTS; Uncharacterized protein
TrEMBLW5CTY72e-25W5CTY7_WHEAT; Uncharacterized protein
STRINGTraes_3B_436FBF290.13e-26(Triticum aestivum)
STRINGTraes_3DL_37D040907.19e-27(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-22homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]