PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_48F7A19D2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 143aa    MW: 16204.1 Da    PI: 8.6197
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_48F7A19D2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.36.4e-2368128359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                            Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v+++ +edp ++++tY+ eH+++
  Traes_3DL_48F7A19D2.1  68 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQEnHEDPPLFKVTYTYEHTCN 128
                            9**************************99999*******9752689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-2356128IPR003657WRKY domain
SuperFamilySSF1182904.18E-2260129IPR003657WRKY domain
SMARTSM007749.1E-3366129IPR003657WRKY domain
PfamPF031064.0E-2468127IPR003657WRKY domain
PROSITE profilePS5081116.19168130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASAPPKGES FDFEDPRAQE AMGSASASCS PAGGVFGVSP PESSRRDSRK RRKDRPSWIK  60
HTFTPHFDGH LWRKYGQKNI KDSAFPRLYY RCSYREDRQC LASKLVQQEN HEDPPLFKVT  120
YTYEHTCNTA PVPTPDVVAE LPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-14681271068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-83HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186009.11e-103probable WRKY transcription factor 46
TrEMBLA0A3B6H0N91e-101A0A3B6H0N9_WHEAT; Uncharacterized protein
STRINGTraes_3DL_48F7A19D2.11e-104(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-19WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]