PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_4D42B475B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 101aa    MW: 11239.2 Da    PI: 9.2836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_4D42B475B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.3e-101453140
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                           rg+WT+ Ede+lv +++ +G g W + +++ g  +t+ ++
  Traes_3DL_4D42B475B.2 14 RGAWTAMEDEILVSYINDHGEGKWGSLPKRAGRLLTPSSL 53
                           89******************************77887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-11543IPR009057Homeodomain-like
SuperFamilySSF466896.47E-7845IPR009057Homeodomain-like
PROSITE profilePS500907.12946IPR017877Myb-like domain
PfamPF002494.7E-71452IPR001005SANT/Myb domain
CDDcd001672.16E-51645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MGRKPCCAKE GLNRGAWTAM EDEILVSYIN DHGEGKWGSL PKRAGRLLTP SSLIYALLRT  60
LHQYIQLSIM RAIFFKSIDI SSKLFLAIAT ETKSVCVCAY A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1914601e-168AB191460.1 Triticum aestivum Tamyb10-D1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_3DL_4D42B475B.26e-70(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3801423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-18myb domain protein 111
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]