PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_575C5670C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 221aa MW: 24608.7 Da PI: 7.1574

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_575C5670C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.8	4.7e-10	67	138	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fYn Y+ e GF +r ks+ + +++ +++ vC ++gk+++e+++ + r++C a++ + +++d+ w++t+ + Traes_3DL_575C5670C.2 67 DFYNLYSWEHGFGMRYGKSRLNAEKT-KCMQEVVCGCSGKPTKENSR---------SCRCECPAMISLLRTSDNGWYITEHR 138 6***************99995555.678899***9997666.........99******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-7	67	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
LLWEITRNKF WSVCRIRVGN QPPGRAPCPE RVGVLEQTIR GYADKLGDHV VEPAIGLTFD 60 SLCESYDFYN LYSWEHGFGM RYGKSRLNAE KTKCMQEVVC GCSGKPTKEN SRSCRCECPA 120 MISLLRTSDN GWYITEHRAN RKPCFDADMW GEGYGCSRLY RDIRNSDTQE VDTGCKGCFA 180 ATPEGVPAGS CWGQDDDKSA HNTLCARDGI GTTRGCISGS I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-111	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198214.1	8e-64	protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBL	A0A446PVH6	6e-59	A0A446PVH6_TRITD; Uncharacterized protein
STRING	Traes_3DL_575C5670C.2	1e-164	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-08	FAR1-related sequence 7

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]