PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_7B0E46392.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 64aa MW: 7951.03 Da PI: 9.1898

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_7B0E46392.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.8	2e-14	10	62	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fYn+YA e GFsvrk + + + n++i+ r+fvCs+eg ree++ k+++e r Traes_3DL_7B0E46392.1 10 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKFVCSREGCREEKHMKRKREDR 62 6******************************************9999444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-12	10	62	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MFHSEDEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KFVCSREGCR EEKHMKRKRE 60 DRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150962.1	2e-35	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020179994.1	2e-35	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453MVG2	5e-34	A0A453MVG2_AEGTS; Uncharacterized protein
TrEMBL	A0A453MYE8	1e-37	A0A453MYE8_AEGTS; Uncharacterized protein
TrEMBL	A0A453PYR9	2e-34	A0A453PYR9_AEGTS; Uncharacterized protein
STRING	Traes_1DL_DD0FCDF93.1	1e-34	(Triticum aestivum)
STRING	Traes_3DL_7B0E46392.1	8e-39	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-07	FAR1-related sequence 10

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]