PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_801E89185.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 255aa    MW: 28197.8 Da    PI: 6.1563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_801E89185.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-111802201055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Traes_3DL_801E89185.1 180 KRRRERINEKLRVLQRLIPNG-----TKVDISTMLEEAVQYVKFLQ 220
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14170234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-11179224No hitNo description
PfamPF000104.5E-8180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEAKCAAIWS SVDGRSEESE MIAHLQSMFW SNSDAAVNLC PPNTSANSCV TASTVHSNLF  60
LPLDMESHVV TTPMVNTGMD LCLDHRHQTV TGHKRTSHMD EQIKRTSKKS RTVPSVSGAL  120
CLSLADNETN GDTVNQSSSS CCSSEEDLIG ASEEPFVPNQ GDNSRGCKRP SKNLQSLCAK  180
RRRERINEKL RVLQRLIPNG TKVDISTMLE EAVQYVKFLQ LQIKVLSSDE TWMYAPLAYN  240
GMDISLSLRI TADQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9968111e-163HE996811.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69457.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184287.10.0transcription factor bHLH84-like
TrEMBLA0A3B6GZT60.0A0A3B6GZT6_WHEAT; Uncharacterized protein
STRINGTraes_3DL_801E89185.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-42bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]