PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_845402F4B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 135aa    MW: 15865.3 Da    PI: 12.3577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_845402F4B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-141462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+ eEd +l + v+++ +  +W t +++ g++R++k+c++rw++yl
  Traes_3DL_845402F4B.1 14 RGPWSREEDAILRNFVRRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62
                           89******************999*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-17565IPR009057Homeodomain-like
SuperFamilySSF466893.59E-13865IPR009057Homeodomain-like
PROSITE profilePS5129416.908966IPR017930Myb domain
SMARTSM007176.2E-81364IPR001005SANT/Myb domain
PfamPF002492.9E-121462IPR001005SANT/Myb domain
CDDcd001678.78E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN  60
YLPPRAPARR LHRRGGQPHI VPLRRHRKQV VGDRGQAPRP NRQRRQEPLE HQAQEEVLLA  120
DRGAINSPYR RRRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-122AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZXD17e-45A2ZXD1_ORYSJ; Uncharacterized protein
STRINGTraes_3DL_845402F4B.15e-92(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-29myb domain protein 36
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]