PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_A3AC10E58.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 194aa    MW: 22651.9 Da    PI: 6.6883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_A3AC10E58.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.51.8e-571192128318
                   GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                            L+q L++Rp+gpp+lRiT+++ p++g   +e++ee+g+ L+++A++++vpf+++  +a+++e++++e+L+++++E l+Vn++++ ++l
  Traes_3DL_A3AC10E58.1   1 LIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFKYHG-IASQFEAVQVEDLHIEKDEILIVNSMFRFKTL 87 
                            89*****************************************************.7******************************* PP

                   GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                            +desv  es+r+ vL+++++++P+v+++   + ++n++ F+ rf eal  +sa fd+lea++pr++eer  +E  +++re+ nv++ce
  Traes_3DL_A3AC10E58.1  88 MDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCE 175
                            **************************************************************************************** PP

                   GRAS 302 gaerrerhetlekWrer 318
                            g er er et+++W+ r
  Traes_3DL_A3AC10E58.1 176 GMERMERPETYKQWQVR 192
                            **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.2511194IPR005202Transcription factor GRAS
PfamPF035146.1E-551192IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LIQRLSKRPG GPPELRITAI DTPQPGFRPA ERIEEIGRYL SDYAQTFKVP FKYHGIASQF  60
EAVQVEDLHI EKDEILIVNS MFRFKTLMDE SVVAESPRNM VLNTIRKMKP HVFIHGVTNG  120
SYNAPFFVSR FREALFQFSA HFDMLEANIP RDNEERLLIE STIFSREAIN VISCEGMERM  180
ERPETYKQWQ VRNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-171191127316GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188125.11e-136scarecrow-like protein 9
SwissprotO809338e-76SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A453FWP81e-136A0A453FWP8_AEGTS; Uncharacterized protein
TrEMBLA0A453FWQ11e-136A0A453FWQ1_AEGTS; Uncharacterized protein
TrEMBLA0A453FWQ61e-136A0A453FWQ6_AEGTS; Uncharacterized protein
TrEMBLM8BFT31e-137M8BFT3_AEGTA; Scarecrow-like protein 14
STRINGTraes_3DL_A3AC10E58.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2228967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-78GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]