PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_A631E1F0C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 653aa    MW: 72293.7 Da    PI: 5.1969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_A631E1F0C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09535583348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++l
  Traes_3DL_A631E1F0C.1 535 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNLL 583
                            7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.283528587IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12529586IPR009057Homeodomain-like
SuperFamilySSF466897.26E-15530589IPR009057Homeodomain-like
SMARTSM007173.2E-9532585IPR001005SANT/Myb domain
CDDcd116601.47E-17534584No hitNo description
PfamPF002493.2E-6535583IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MEVDTLQGAQ ETKNGENDFE ENGSLDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV  60
DLPSIDDVGN VEDFFTNDCM LLKEPDFEEG YSELETNGEI HTQQFDADLE VDRLKPSDDS  120
LDIPSKCTVV HDHKPDKLNT EQGDNNIVHQ DNASTETPKS TVLNDSCSAE KEKADACSRS  180
VNNSSTGPSV SGVTSSVPDF SILRGEVCLD NLTIRELQEA FRATFGRETT VKDKLWLKRR  240
ITMGLTNSCD VQSSGCVVKD YKIVCKDAKH KLPTIEGLPK VEVEATSLVR FQVLGSGNER  300
DTSSCSYYRS EDQQRSSNRL KGVSTDNDES EGTLQDEQGA AKRLRKPTKR YIEELADTET  360
LDSTGKLSSP GKRAAHGEVL LRQRVTPLQE VDSLSITYPT RKDTFGGFSV HVPYASRMRR  420
GRPRRNFISF LDDDPPVECP EVQMAVETML GKDGEHVNHV SSAVEVPLMK NAEKKGGHIE  480
TAEKKGGHIE TAEKKGGHIE TADNKEIRSI EADDICRTDA KTKTKRGLKR KHHRAWTLSE  540
VLKLVDGVAQ FGPGKWSEIR RLSFASYSYR TSVDLKDKWR NLLRASQTQL SPENDGVCPR  600
KSNPSIIPIP PAILLRVKEL AELQPQAGNL AAAIKFSGQS SKVAQGRGSS GFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLA0A3B6H0060.0A0A3B6H006_WHEAT; Uncharacterized protein
STRINGTraes_3DL_A631E1F0C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-78TRF-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]