PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_BF7D83705.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 82aa MW: 9238.53 Da PI: 7.345

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_BF7D83705.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	80.9	2.2e-25	1	82	292	374
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 reivn++aceg +r+er e ++kWr+r+++aGF p p+s+++ +++ll+ + ++ y+ ee++g l +gW +++L+++SaW+ Traes_3DL_BF7D83705.1 1 REIVNILACEGPDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGGIRSLLSSYCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 82 79**************************************************66.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	7.7E-23	1	82	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	15.185	1	63	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
REIVNILACE GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGGIRSLL SSYCDRYKFE 60 EDHGGLHFGW GEKTLIVASA WQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249646	1e-115	AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564775.1	6e-54	scarecrow-like protein 1
Refseq	XP_015610828.1	4e-54	scarecrow-like protein 1
Swissprot	Q9SDQ3	3e-31	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0D3EX17	9e-53	A0A0D3EX17_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YI89	9e-53	A0A0D9YI89_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CB54	9e-53	A0A0E0CB54_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FWL3	3e-53	A0A0E0FWL3_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0FWL4	9e-53	A0A0E0FWL4_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0JRU3	9e-53	A0A0E0JRU3_ORYPU; Uncharacterized protein
TrEMBL	A0A0E0N5V5	3e-53	A0A0E0N5V5_ORYRU; Uncharacterized protein
TrEMBL	I1HU00	1e-52	I1HU00_BRADI; Uncharacterized protein
TrEMBL	I1NTZ3	9e-53	I1NTZ3_ORYGL; Uncharacterized protein
TrEMBL	Q8RZQ6	9e-53	Q8RZQ6_ORYSJ; Os01g0881500 protein
STRING	BRADI2G56910.1	2e-53	(Brachypodium distachyon)
STRING	OGLUM01G43650.1	2e-53	(Oryza glumipatula)
STRING	ORUFI01G42800.1	5e-54	(Oryza rufipogon)
STRING	OS01T0881500-01	2e-53	(Oryza sativa)
STRING	OPUNC01G38160.1	2e-53	(Oryza punctata)
STRING	ORGLA01G0333300.1	2e-53	(Oryza glaberrima)
STRING	Traes_3DL_BF7D83705.1	1e-55	(Triticum aestivum)
STRING	OBART01G39420.1	2e-53	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-33	SCARECROW-like 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]