PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_2D5A1C423.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 38aa    MW: 4535.2 Da    PI: 10.1514
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_2D5A1C423.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.27.3e-10138239
                   FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39
                           fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g
  Traes_3DS_2D5A1C423.1  1 FYNKYALEKGFSVRKSYVEWDGSNKYIILRKTVCSRQG 38
                           9***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-7138IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 38 aa     Download sequence    Send to blast
FYNKYALEKG FSVRKSYVEW DGSNKYIILR KTVCSRQG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-54HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154637.13e-18protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020189695.13e-18protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A446RF001e-18A0A446RF00_TRITD; Uncharacterized protein
TrEMBLA0A452XDK61e-18A0A452XDK6_AEGTS; Uncharacterized protein
TrEMBLA0A452XR331e-18A0A452XR33_AEGTS; Uncharacterized protein
TrEMBLA0A452ZPX62e-18A0A452ZPX6_AEGTS; Uncharacterized protein
TrEMBLA0A453DIU82e-18A0A453DIU8_AEGTS; Uncharacterized protein
TrEMBLA0A453DSV91e-18A0A453DSV9_AEGTS; Uncharacterized protein
TrEMBLA0A453IRZ12e-18A0A453IRZ1_AEGTS; Uncharacterized protein
STRINGTraes_3DS_2D5A1C423.16e-20(Triticum aestivum)
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]