PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_4F293F5BA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 243aa    MW: 28147.4 Da    PI: 8.4109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_4F293F5BA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-053759223
                           EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                           +C+ C+++++++ +L  Hi+  H
  Traes_3DS_4F293F5BA.1 37 SCSVCSRVYPTSRLLSIHISEaH 59
                           6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035511934IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
SMARTSM0035553659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
SMARTSM003550.27499IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807699IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVASVSMVC CPIAGCGAHL DCLEDFEDHY STRHTASCSV CSRVYPTSRL LSIHISEAHD  60
SFFQAKVARG FPMYECLVEG CGEKLKTYKS RQQHLVDKHQ FPNSFEFFKR AQPSQRHRQK  120
YHHRRQTAYK GEETRDTVMD VDGKNPRQSK SRYRPKQHDH KESKEKEHDH KESKENEHHE  180
KEAKESDMEV EQKIDELSFA VSRLSTADSV PSSITFGHRR ARGLTFVPRS IRQNKQVSQP  240
EAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614290.0AK361429.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140F23.
GenBankAK3694620.0AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201569.10.0zinc finger protein 511
TrEMBLA0A3B6GRT71e-180A0A3B6GRT7_WHEAT; Uncharacterized protein
TrEMBLA0A453E3021e-180A0A453E302_AEGTS; Uncharacterized protein
STRINGTraes_3DS_4F293F5BA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-68zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]