PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_796E4C73A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 77aa    MW: 9018.2 Da    PI: 9.4879
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_796E4C73A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.14.6e-161365557
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           t+ ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++
  Traes_3DS_796E4C73A.1 13 TKKSPLQIQMLESFYSEVQYPKPEDLTEYAASVGLTYNQVRIWFKERRRKERR 65
                           567899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.382666IPR001356Homeobox domain
SMARTSM003892.9E-14870IPR001356Homeobox domain
SuperFamilySSF466894.71E-16872IPR009057Homeodomain-like
PfamPF000462.0E-131365IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-161373IPR009057Homeodomain-like
CDDcd000866.93E-111356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
AKGFLAKSDN AGTKKSPLQI QMLESFYSEV QYPKPEDLTE YAASVGLTYN QVRIWFKERR  60
RKERRHMEAA EVHVETQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739811e-100AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153547.15e-45homeobox-DDT domain protein RLT3-like isoform X1
RefseqXP_020153548.15e-45homeobox-DDT domain protein RLT3-like isoform X2
TrEMBLA0A446N6P72e-49A0A446N6P7_TRITD; Uncharacterized protein
STRINGTraes_3DS_796E4C73A.12e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.13e-11Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]