PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_97BBFFA03.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 156aa MW: 17773.6 Da PI: 7.6757

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_97BBFFA03.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	8e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l ++ e++V++WFqNrRa+ k+ Traes_3DS_97BBFFA03.2 22 RQRWTPTQMQLQILESIFDQcNGTPSKQKIKDITAELsqhgQILETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	100.2	1.5e-32	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++ tP+k++i++itaeL+++G+i ++NV++WFQNr+aR+++kq Traes_3DS_97BBFFA03.2 21 ARQRWTPTQMQLQILESIFDQCNGTPSKQKIKDITAELSQHGQILETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-17	16	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.252	18	83	IPR001356	Homeobox domain
SMART	SM00389	1.3E-14	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-17	21	88	IPR009057	Homeodomain-like
CDD	cd00086	1.51E-11	22	84	No hit	No description
Pfam	PF00046	1.8E-18	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MSLGNLYCNP LMVHGGHKIT ARQRWTPTQM QLQILESIFD QCNGTPSKQK IKDITAELSQ 60 HGQILETNVY NWFQNRRARS KRKQAASSLP NNAESEAEGD EESLTDKNPR SDGSQQENMA 120 VRAHNPERIS EMHRHFDAAE REQVRGPWSS NDASRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-97	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	6e-67	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3B6U8F8	1e-114	A0A3B6U8F8_WHEAT; Uncharacterized protein
STRING	Traes_3DS_97BBFFA03.2	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-36	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]