PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_FA8B7593B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 93aa    MW: 9955.16 Da    PI: 8.829
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_FA8B7593B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.7e-121841427
                           ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                            +C+++a++G+C+yG  Ck+ H++
  Traes_3DS_FA8B7593B.2 18 QPCSYYAQNGYCRYGVACKYDHPM 41
                           59********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-61342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7231442IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-51441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-61839IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-91841IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MQFLIRGFFY HLNFQGAQPC SYYAQNGYCR YGVACKYDHP MAKDPSVNQV GSPVTASEPS  60
GSILPKGVFP PDTVMRAQTN TTTGGSSSPG GGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-76HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200472.13e-46zinc finger CCCH domain-containing protein 6-like isoform X2
SwissprotQ5NAW27e-26C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A453EMV62e-46A0A453EMV6_AEGTS; Uncharacterized protein
STRINGTraes_3DS_FA8B7593B.22e-63(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.37e-09C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]