PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_0CCA685F3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 186aa    MW: 21072.2 Da    PI: 11.0361
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_0CCA685F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-101081851397
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            ++ +++p + a++ g+    s t++le ++g  + + +  ++k g+ vl++GW +Fv  +++ke+ ++ F + g+s+f  +v++f
  Traes_4AL_0CCA685F3.1 108 RRSMCIPWEVANHLGSM--ISETIKLEAPNG-IFLIGV--CRKTGELVLRAGWDKFVAMHHIKENYSFWFVYRGNSTF--KVHIF 185
                            45699999999555543..7789*****998.578888..89999***************************999999..88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1593186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-1495186IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-12106186No hitNo description
PfamPF023627.4E-8109185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
QIRLLHPSPI YGSRRPPPPA LNRASRRPGA PRLPPPISPV RANGDEPERP QLLRPLSPEQ  60
PHPSPSSQQG LPGRSARESC TMWWRHYPRN HVGDDKTQFV AVATGGFRRS MCIPWEVANH  120
LGSMISETIK LEAPNGIFLI GVCRKTGELV LRAGWDKFVA MHHIKENYSF WFVYRGNSTF  180
KVHIFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6HWQ56e-72A0A3B6HWQ5_WHEAT; Uncharacterized protein
TrEMBLA0A3B6I0A46e-72A0A3B6I0A4_WHEAT; Uncharacterized protein
TrEMBLA0A446R9S86e-72A0A446R9S8_TRITD; Uncharacterized protein
TrEMBLA0A446RA156e-72A0A446RA15_TRITD; Uncharacterized protein
STRINGTraes_4AL_0CCA685F3.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-10B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]