PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_2334B226E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 175aa    MW: 19814.1 Da    PI: 7.6352
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_2334B226E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-09951282255
                            SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                             +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Traes_4AL_2334B226E.1  95 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 128
                            69*****************************985 PP
2ELK34.64.2e-124869122
                    ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                           ELK +Ll+KYsgyL+sL+  +s
  Traes_4AL_2334B226E.1 48 ELKSHLLNKYSGYLSSLWRDLS 69
                           9*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.6554868IPR005539ELK domain
SMARTSM011881.5E-64869IPR005539ELK domain
PfamPF037892.2E-94869IPR005539ELK domain
PROSITE profilePS5007112.45568131IPR001356Homeobox domain
SuperFamilySSF466892.78E-1969145IPR009057Homeodomain-like
SMARTSM003899.5E-1270135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-2673132IPR009057Homeodomain-like
CDDcd000868.09E-1377131No hitNo description
PfamPF059202.7E-1688127IPR008422Homeobox KN domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
HPCLLDCQCD KADDHSYVEG GGSSEDEQEI GDVGGLPEIT SHCAEDKELK SHLLNKYSGY  60
LSSLWRDLSK KKKKGKLPRD ARQKLLHWWQ LHYRWPYPSE LEKAALAEST GLDAKQINNW  120
FINQRKRHWK PTPPAMEYMS QQQHPYGGPS SSSSAPFLTT DGHYFAGGSA YPRGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352051e-118BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406221e-118BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275711e-118KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175441.14e-97homeobox protein knotted-1-like 4
SwissprotQ75LX75e-77KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A446RAC91e-117A0A446RAC9_TRITD; Uncharacterized protein
STRINGTraes_4AL_2334B226E.11e-128(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-46KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]