PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_3AFF9664B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 401aa    MW: 43548.9 Da    PI: 7.1923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_3AFF9664B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.4e-50111421129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPt+eel+++yL+kkv++++++l +vi+++d++k+ePwd+++  ++ +  +++wy Fs++dkky+ g+r+nrat++g+Wka
  Traes_4AL_3AFF9664B.2  11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDIDLNKLEPWDIQErcRIGTgPQNDWYLFSHKDKKYPMGTRTNRATAAGFWKA 97 
                            69****************************.9***************953444442456***************************** PP

                    NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            tg+dk+++s+ ++  +g++ktLvfykgrap+g+k+dW+mheyrle
  Traes_4AL_3AFF9664B.2  98 TGRDKAIYSAaGSGRIGMRKTLVFYKGRAPHGRKSDWIMHEYRLE 142
                            *********977788****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-557185IPR003441NAC domain
PROSITE profilePS5100555.2111185IPR003441NAC domain
PfamPF023652.5E-2612141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDIDLNK LEPWDIQERC  60
RIGTGPQNDW YLFSHKDKKY PMGTRTNRAT AAGFWKATGR DKAIYSAAGS GRIGMRKTLV  120
FYKGRAPHGR KSDWIMHEYR LEDAVPVNPG DATYYSSASF PIHGVAGDQS STQEDGWVIC  180
RVFKKKNIVA QRQAGQNHGG GGAASNKLVD AGAMERSQSN CSSMLAAASD HAKAQMTHCS  240
GSDDGLDHIL SYMGRSSTAS CRQETKPTNP SSSVLDHLIN RVCHSGSNTL YDKFMKLPPL  300
EHVVPGRLLP PPTEYSGDWE ALDRLAAYEL SGLSNPALAE TMNDMSYIAD ELGGAASYSG  360
GGTLHTPSVT GAGDGDLWSL ARPVSSLHAD LTMTWFKAVG C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-461118715170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2491200.0AK249120.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149597.10.0NAC domain-containing protein 66-like
SwissprotQ84WP65e-99NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A446RIP00.0A0A446RIP0_TRITD; Uncharacterized protein
STRINGTraes_4AL_3AFF9664B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-99NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  4. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  5. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  6. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  7. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  8. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]