PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_4108A9D5E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 115aa    MW: 12739.8 Da    PI: 10.9495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_4108A9D5E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.57.9e-082162135
                   GATA 21 tLCnaCGlyyrkkgl 35
                           +LCnaCG++yrkk++
  Traes_4AL_4108A9D5E.1  2 SLCNACGIRYRKKRR 16
                           6***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.7E-4216IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MSLCNACGIR YRKKRREAMG LEDPPKKRQP AAAAAPAACS EAGGESADPE QQQPQQAKKT  60
TTTTKRGREV ELRVVGFGKE VVLKQRRRMR RRQRLGEEEK AAILLMALSS GVIYG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490QRRRMRR
28691RRMRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709091e-123AK370909.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2120C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169086.13e-46GATA transcription factor 15-like
TrEMBLA0A446RFJ03e-75A0A446RFJ0_TRITD; Uncharacterized protein
STRINGTraes_4AL_4108A9D5E.19e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]