PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_445A910EB.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 217aa    MW: 23499.2 Da    PI: 11.6735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_445A910EB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.5e-2542148199
                            EEEE-..-HHHHTT-EE--HHH.HTT...........---...--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.esktltledesg..rsWevkliyrkksgryvltkGWkeFvkangL 74 
                            f+kv tpsdv+k++rlv+pk+fae+h               +  +  l++ed +g  + W ++++y+++s++yv+tkGW+ Fv++ +L
  Traes_4AL_445A910EB.2  42 FDKVVTPSDVGKLNRLVVPKQFAERHilprllggaarA---AcPGAVLRFEDGRGggKAWAFRFSYWGSSQSYVMTKGWSAFVRDRRL 126
                            89*****************************9875431...2234579999977788******************************* PP

                            -TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                             +gD+v F    r +++l++  +r+
  Traes_4AL_445A910EB.2 127 AAGDTVSFC---RAGARLFIDCRRR 148
                            ********9...4567778877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-3235148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2439142IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-2440134No hitNo description
SMARTSM010191.6E-1442149IPR003340B3 DNA binding domain
PfamPF023626.3E-2242148IPR003340B3 DNA binding domain
PROSITE profilePS5086312.94342149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALTAAWESR GAAQEGGGGG VELARSGKGS NGEERIRREH MFDKVVTPSD VGKLNRLVVP  60
KQFAERHILP RLLGGAARAA CPGAVLRFED GRGGGKAWAF RFSYWGSSQS YVMTKGWSAF  120
VRDRRLAAGD TVSFCRAGAR LFIDCRRRGA GIVASAPVTR LLVPAVVPRV VTLMPQRSTP  180
SDERAPRGRC VRLFGVDLEL AGAQPLPLDL QLALMRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-39381484113B3 domain-containing transcription factor NGA1
5os9_B7e-39381484113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179500.11e-139B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS552e-54Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A3B6I4T61e-152A0A3B6I4T6_WHEAT; Uncharacterized protein
STRINGTraes_4AL_445A910EB.21e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.13e-36B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]