PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_5659286D11.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 236aa    MW: 24709.5 Da    PI: 8.2366
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_5659286D11.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.51.3e-271263357
             ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                            + +Y+eCl+NhAa+lG++a DGC+E++p+   ++++aal CaACgCHRnFHR+  
  Traes_4AL_5659286D11.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPD---DSQPAALLCAACGCHRNFHRKAF 63
                            568*************************8...6789****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-231462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-221561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-191561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.2871562IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.81E-17109185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27111186IPR009057Homeodomain-like
TIGRFAMsTIGR015659.3E-27123184IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR  60
KAFLDGTASP GAASQHAPLM LPSPGAPPGY MHHHLAMAGP SGPGVAMGGG DGGGSHSGGG  120
SRRRTRTKFT DEQKARMLRF AERLGWRMPK REPGRAPGDD EVARFCREIG VTRQVFKVWM  180
HNHKAGVGGS GGAGAQTSSS TTRGGGGGGG GAGGMSPAMG GDGEDDEEVR GSEMCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-171221841773ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915329e-83AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149599e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126119e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.11e-136zinc-finger homeodomain protein 11-like
SwissprotA2XLF42e-95ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-95ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6I0K21e-170A0A3B6I0K2_WHEAT; Uncharacterized protein
TrEMBLA0A446R8361e-170A0A446R836_TRITD; Uncharacterized protein
STRINGTraes_4AL_5659286D11.11e-171(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-43homeobox protein 22
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]