PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_69EEFB3DA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 150aa    MW: 15619.3 Da    PI: 9.2475
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_69EEFB3DA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-08111149240
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 
                            rk+ +++k+q  +Lee+F+++++++ ++++ LA++lgL 
  Traes_4AL_69EEFB3DA.1 111 RKKLRLSKDQAAVLEECFKMHSTLNPKQKTALANRLGLR 149
                            678899*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.15E-697149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-899149IPR009057Homeodomain-like
PfamPF000468.8E-6111149IPR001356Homeobox domain
CDDcd000861.36E-5111148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MHHAAGLDLG LGLGLGLASQ GSLTSSTTTA SSSPASQAHA QHWTAAFSSV VGAQEYERQQ  60
LLHRKEEPGM RPSTSPESGV SAGTKRGLER TGSGVSPATG SDEDDDGAGG RKKLRLSKDQ  120
AAVLEECFKM HSTLNPKQKT ALANRLGLRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652383e-81AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170043.19e-52homeobox-leucine zipper protein HOX2-like
TrEMBLA0A446RI881e-102A0A446RI88_TRITD; Uncharacterized protein
STRINGTraes_4AL_69EEFB3DA.11e-104(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.16e-18homeobox protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]