PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_6E51971E7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 76aa    MW: 9070.24 Da    PI: 7.8335
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_6E51971E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-105382255
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
                            +yps++++  LA+++gL+ +q+ +WF N+R ++
  Traes_4AL_6E51971E7.1  5 WPYPSESQKVALAESTGLDLKQINNWFINQRKRH 38
                           58*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0047145IPR001356Homeobox domain
PROSITE profilePS5007111.337141IPR001356Homeobox domain
SuperFamilySSF466895.56E-15255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-21242IPR009057Homeodomain-like
PfamPF059202.3E-16237IPR008422Homeobox KN domain
CDDcd000863.33E-12442No hitNo description
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MHYKWPYPSE SQKVALAEST GLDLKQINNW FINQRKRHWK PSDEMQFVMM DAYHPPNAAF  60
YMDGHFVNDS GLYRFG
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2244981e-121AF224498.1 Triticum aestivum KNOTTED-1-like homeobox protein a (knox1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147582.19e-52homeobox protein KNOX3
SwissprotQ434842e-52KNOX3_HORVU; Homeobox protein KNOX3
TrEMBLA0A453H9G59e-52A0A453H9G5_AEGTS; Uncharacterized protein
STRINGEMT063083e-52(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3229724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-37KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Müller KJ, et al.
    The barley Hooded mutation caused by a duplication in a homeobox gene intron.
    Nature, 1995. 374(6524): p. 727-30
    [PMID:7715728]
  2. Krusell L,Rasmussen I,Gausing K
    DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
    FEBS Lett., 1997. 408(1): p. 25-9
    [PMID:9180261]