PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_8FABAA6C3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 415aa    MW: 44344.1 Da    PI: 7.0684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_8FABAA6C3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.3e-50111411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat++g+Wka
  Traes_4AL_8FABAA6C3.2  11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQErcRIGTgPQNDWYLFSHKDKKYPTGTRTNRATAAGFWKA 97 
                            69****************************.9***************953444442456***************************** PP

                    NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            tg+dk+++s+ ++  +g++ktLvfykgrap+g+k+dW+mheyrl
  Traes_4AL_8FABAA6C3.2  98 TGRDKAIYSAaGSGRIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 141
                            *********977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-557151IPR003441NAC domain
PROSITE profilePS5100554.68711196IPR003441NAC domain
PfamPF023652.7E-2612141IPR003441NAC domain
SuperFamilySSF1019414.18E-55184196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQERC  60
RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSAAGS GRIGMRKTLV  120
FYKGRAPHGH KSDWIMHEYR LDDAVPAPAN PNNPAAPGDA GSTYYSGTSS SPIRGVAGDQ  180
SSGQEDGWVI CRVFKKKNIV VNQGQNGGGG GGAASNKLAG AAPMERSQSN CSSTVTTISN  240
HIKAAQQQQQ DQQNQLLHYS ASDDALDHIL NHYMHGRSPT TPCKQEAKPA AGSALDHLIN  300
STACPNGTLY ERFMKLPPLE HVVSGGLLHP PATEYGGGSG NNNIGTEWDS LDRLAASYEL  360
NGLSDDVASA SKNSSMASFF VDGHGGATGA GAGDGDLWSL ARSVSSLHAD LTTMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-451119815170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2491200.0AK249120.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177243.10.0NAC domain-containing protein 43-like
TrEMBLA0A446RIQ00.0A0A446RIQ0_TRITD; Uncharacterized protein
STRINGTraes_4AL_8FABAA6C3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.15e-82NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]