PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_98B1C762B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 349aa    MW: 38037.8 Da    PI: 10.3676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_98B1C762B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31283340359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Traes_4AL_98B1C762B.1 283 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 340
                            9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18233279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-34269340IPR003657WRKY domain
PROSITE profilePS5081130.297276342IPR003657WRKY domain
SuperFamilySSF1182902.75E-27279340IPR003657WRKY domain
SMARTSM007742.6E-38281341IPR003657WRKY domain
PfamPF031062.5E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVEEANRM AVESCHRVLG LLAQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNGNGN  60
EGGGTHHPRA KLVSRRQTPG FLSQKSFLDN NTPVVVLNSA HPSTSSAQVY PSSRNSILDS  120
SQAAHPIGGP PKLVQPLSAH FQFGDSSRYN QFQQQHQHQQ QKMRAEMFKR SNSGINLKFD  180
SPSGTGTMSS ARSFMSSLSM DGSVASLDAK SSSFHLIGGP AMSDPVNAQQ APRRRCSGRG  240
EDGNGKCAAT GRCHCSKRSR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH  300
PRGYYKCSSV RGCPARKHVE RCVDDPSMLI VTYEGEHNHT RMPTQSAQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20274343775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654280.0EU665428.1 Triticum aestivum WRKY16 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149328.10.0protein WRKY1-like isoform X1
SwissprotQ9SR074e-91WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A3B6HVD70.0A0A3B6HVD7_WHEAT; Uncharacterized protein
TrEMBLA0A446R6S20.0A0A446R6S2_TRITD; Uncharacterized protein
STRINGTraes_4AL_98B1C762B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-80WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]