PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_98EA87DFA1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 271aa MW: 28835.5 Da PI: 8.258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_98EA87DFA1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.7e-12	126	170	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Traes_4AL_98EA87DFA1.1 126 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 170 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.366	3	63	IPR017877	Myb-like domain
SMART	SM00717	11	7	65	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-4	10	63	No hit	No description
PROSITE profile	PS51294	16.873	119	175	IPR017930	Myb domain
SuperFamily	SSF46689	6.17E-17	121	176	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-10	123	173	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.5E-17	123	173	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.5E-11	124	169	IPR009057	Homeodomain-like
CDD	cd00167	7.41E-10	126	171	No hit	No description
Pfam	PF00249	6.3E-11	126	170	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009651	Biological Process	response to salt stress
GO:0009733	Biological Process	response to auxin
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MASQGAATAA WTNEEDKAFE NAVAAGAPPP LDGPPEECWF AALAASVPAR STEEVRRHYE 60 ALVEDVGAID AGRVPLPRYA GEDSSSAAAT AAAAPGKDRR EDRKSFESDS GKGCSKAEQE 120 RRKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP TQVASHAQKY FIRLNSMNRD 180 RRRSSIHDIT SINNAAQAVP PITGQAPAAL GGPPGGMMKH PGMVGMYGGA PMGHPVAGHM 240 VPAAVGTPVM FPPRPGHPPY AMPVGYPAPH Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:22773748}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q8LH59}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951948	0.0	JF951948.1 Triticum aestivum clone TaMYB65 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147245.1	0.0	transcription factor SRM1-like
Swissprot	B8A9B2	1e-111	MYBS1_ORYSI; Transcription factor MYBS1
Swissprot	Q8LH59	1e-111	MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBL	G9DRB1	0.0	G9DRB1_WHEAT; MYB-related protein
STRING	Traes_4AL_98EA87DFA1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9466	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	5e-61	MYB family protein

Publications ? help Back to Top
Zhang L,Zhao G,Jia J,Liu X,Kong X Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress. J. Exp. Bot., 2012. 63(1): p. 203-14 [PMID:21934119] Hong YF, et al. Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals. Plant Cell, 2012. 24(7): p. 2857-73 [PMID:22773748] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]