PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_99942CBEA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 401aa    MW: 43340.4 Da    PI: 7.1003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_99942CBEA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.5e-50111411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++w+ Fs++dkky+tg+r+nrat++g+Wka
  Traes_4AL_99942CBEA.2  11 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQErcRIGTgPQNDWHLFSHKDKKYPTGTRTNRATTAGFWKA 97 
                            69****************************.9***************953444442456***************************** PP

                    NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            tg+dk+++s+ ++  +g++ktLv+ykgrap+g+k+dW+mheyrl
  Traes_4AL_99942CBEA.2  98 TGRDKAIYSAaGSGRIGMRKTLVYYKGRAPHGHKSDWIMHEYRL 141
                            *********977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-547151IPR003441NAC domain
PROSITE profilePS5100553.96711191IPR003441NAC domain
PfamPF023652.8E-2512141IPR003441NAC domain
SuperFamilySSF1019411.7E-54179191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQERC  60
RIGTGPQNDW HLFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIYSAAGS GRIGMRKTLV  120
YYKGRAPHGH KSDWIMHEYR LDDAVAPPTN PVFAAGDASS YYSGISVHDM AGGQSSSTQE  180
DGWVICRVFK KKNIVVQHQA GQSGGGRGAA SNKLVGAGAM EHSQSNCSST VTPASANAKA  240
QMQQHLPHSD DALDHILNYM GRSSTASCRQ ETKPPNPSSS ALDHLINSAC RNGTSTLYDK  300
FMKLPPLEHV VPGGLLPPPN EYGRDWDALD RLAAYELNGL SNPALAETTT DMSYIADELG  360
GVTSYSAGGT LHTPSVTVAG DGDLWSLARP VSSLHADLTM T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-441119315170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2491200.0AK249120.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149597.10.0NAC domain-containing protein 66-like
SwissprotQ84WP61e-100NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A3B6I1N70.0A0A3B6I1N7_WHEAT; Uncharacterized protein
STRINGTraes_4AL_99942CBEA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-90NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  4. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  5. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  6. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  7. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  8. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]