PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_A6AA602BC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 123aa    MW: 12708.8 Da    PI: 6.9475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_A6AA602BC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0599120323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C+ C+k+F++   L +H +  H
  Traes_4AL_A6AA602BC.1  99 CKSCSKTFNSEGALASHSKAkH 120
                            *****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.47197123IPR007087Zinc finger, C2H2
PROSITE patternPS00028099120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
TEIDDSEDGD DSSDDSEDSS DEEEEETPKK PETGKKRAAG SVLKTPVTDK KAKIATPSGQ  60
KTGDKKGAVH VATPHPAKKA GKTPATSEKS PKSGGSVACK SCSKTFNSEG ALASHSKAKH  120
EAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6566021e-175DQ656602.1 Triticum aestivum histone deacetylase HDAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.15e-75histone deacetylase HDT2-like
SwissprotQ9M4U58e-40HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A3B6A4593e-74A0A3B6A459_WHEAT; Uncharacterized protein
STRINGTraes_4AL_A6AA602BC.12e-78(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-20histone deacetylase 2C
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]