PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_B808CA890.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 156aa    MW: 16896.1 Da    PI: 11.1736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_B808CA890.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0595117123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg+ F++   L  H+r+H
  Traes_4AL_B808CA890.2  95 HRCGTCGQAFPTGQALGGHMRRH 117
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-594118No hitNo description
PfamPF139124.8E-1095119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.70295117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDVASGDARS PIKLIELLLK LSSPAASSRV IGKNKRVQLQ AXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX RVRAHGLDLL LGARPGKARA AVQLHRCGTC GQAFPTGQAL GGHMRRHRPA  120
VAAATWTETA TSSSTSCLSV SGQHDDADWP TLIQFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152686.13e-47zinc finger protein ZAT11-like
TrEMBLA0A3B6HWH66e-51A0A3B6HWH6_WHEAT; Uncharacterized protein
TrEMBLA0A446R0F46e-51A0A446R0F4_TRITD; Uncharacterized protein
STRINGTraes_4AL_B808CA890.28e-82(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-08C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]