PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_BF13412D4.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 211aa MW: 23626.9 Da PI: 10.5121

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_BF13412D4.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.3e-50	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv++yL++k+ g ++ + vi+evd+yk+ePw+Lp+k+++ + kewyfFs+rd+ky++g+r+nra+ +gyWka Traes_4AL_BF13412D4.2 11 LPPGFRFHPTDEELVMYYLCRKCGGLPIAA-PVIAEVDLYKFEPWRLPEKAAGggpDAKEWYFFSPRDRKYPNGSRPNRAAGTGYWKA 97 79***********************999.89***********65444455677************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+v s + v +kk Lvfy g+ pkg+kt+W+mheyrl Traes_4AL_BF13412D4.2 98 TGADKPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 138 ***99..779*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-54	8	142	IPR003441	NAC domain
PROSITE profile	PS51005	53.877	11	160	IPR003441	NAC domain
Pfam	PF02365	2.6E-26	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDHGFDGALQ LPPGFRFHPT DEELVMYYLC RKCGGLPIAA PVIAEVDLYK FEPWRLPEKA 60 AGGGPDAKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGSPRPV AIKKALVFYA 120 GKPPKGVKTN WIMHEYRLAD VDRSAAARKN ERFTAHLVXX XXXXXXXXXX XXXXXXXXXX 180 XXXRRGHAKK KGKRGPSCSS TLKLSLSSQP V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-65	6	138	10	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269\|PubMed:20632034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357207	0.0	AK357207.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048E22.
GenBank	AK357598	0.0	AK357598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057F23.
GenBank	AK364049	0.0	AK364049.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021C09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163238.1	1e-105	NAC domain-containing protein 71-like
Swissprot	Q53NF7	6e-90	NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBL	A0A446R454	1e-111	A0A446R454_TRITD; Uncharacterized protein
STRING	Traes_4AL_BF13412D4.2	1e-130	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11804	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	3e-79	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sperotto RA, et al. Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kan CC,Chung TY,Juo YA,Hsieh MH Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]