PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_C060BF9F6.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 288aa    MW: 31377.1 Da    PI: 7.3635
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_C060BF9F6.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.93e-4271061100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll+++p  +reda++sl+yeAear+rdPvyG+v+ i+ lq +++
  Traes_4AL_C060BF9F6.3   7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVSKLLNEIPVAQREDAVNSLAYEAEARLRDPVYGCVAYISVLQLKIK 94 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            q+++e+a +++e
  Traes_4AL_C060BF9F6.3  95 QVREEIANARKE 106
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3236107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVSK LLNEIPVAQR  60
EDAVNSLAYE AEARLRDPVY GCVAYISVLQ LKIKQVREEI ANARKELAGY IGQAAYAPVV  120
PVQHPHAQYA AAGMGLVQPH PHPHQQMAMQ QQQHPYHQQQ IAEAQHLAAV VEVARAGQQQ  180
QQQQHHHQHQ QHEMMMMRQT YANVHGGAAA GPTVAVEPPQ QAAAYDGTAP FLIQQQASPS  240
ALTYRMEEPS PPPQSSGHSH VDMSHASQQQ RHQHTDGSDE GSGGAPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4841108114LOB family transfactor Ramosa2.1
5ly0_B1e-4841108114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681340.0AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161127.11e-168LOB domain-containing protein 6-like
RefseqXP_020161128.11e-168LOB domain-containing protein 6-like
TrEMBLA0A3B6HYL90.0A0A3B6HYL9_WHEAT; Uncharacterized protein
TrEMBLA0A446R5Z50.0A0A446R5Z5_TRITD; Uncharacterized protein
STRINGTraes_4AL_C060BF9F6.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-61ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]