PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_CAF4E16B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 289aa    MW: 30293.6 Da    PI: 6.7837
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_CAF4E16B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.5e-39531531100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+
  Traes_4AL_CAF4E16B5.1  53 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPIADRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQV 140
                            7*************************89************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                            ++l+a+la+lk++
  Traes_4AL_CAF4E16B5.1 141 MTLQAQLASLKAH 153
                            ********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.21552154IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3753151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALGRPLHSN HPQQQQQPAI ATTAPERDST IGSPSDPAII TGRLMSMTGL GSPCGACKFL  60
RRKCARGCVF APYFCHEQGA AHFAAIHKVF GASNVSKLLA HLPIADRAEA AVTVSYEAQA  120
RLRDPVYGCV AHIFALQQQV MTLQAQLASL KAHAAPAPQG MQHQDDVKGY VGGGAADQYG  180
HGGAYQWHNG HGVGAAAAQQ QCAYGGNGGA AAGHDSITAL LAGSAASDYM MYHALEQSAS  240
DDDGHAAAAG FETADQSSFG TEESGWRSSS RYQDCEDLQS VAYAYLKRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34461474104LOB family transfactor Ramosa2.1
5ly0_B1e-34461474104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1584160.0KU158416.1 Triticum aestivum MOR-A gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197851.11e-155LOB domain-containing protein 29-like
SwissprotQ5UG131e-106LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A446RFT90.0A0A446RFT9_TRITD; Uncharacterized protein
STRINGTraes_4AL_CAF4E16B5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-61lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]