PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_E57587E16.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 276aa MW: 29300.2 Da PI: 6.6406

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_E57587E16.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.2	1.3e-29	1	133	24	134
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskksqksaasaln 109 ++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++ a+s + as ++aa++++ ++++q++ a++l Traes_4AL_E57587E16.1 1 MPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS----SRAAPFQHhLQHQPQHDVAAMLG 84 9*****************************************9999988854444444444....33333333366666666666666 PP TCP 110 lakesr........................akarararertrekmrikn 134 ++ +++ a + +r+r+r++++ ++++ Traes_4AL_E57587E16.1 85 FHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 133 6665554566666666666666655555569999999999998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.202	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.2E-25	1	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKT DGETVEWLLQ QAEPAIVAAT GTGTVPANFS TLAASLRPGA 60 SSRAAPFQHH LQHQPQHDVA AMLGFHGHHQ HQLLPPPPQQ QHHHQHPEAP QDPGAGEFMR 120 KRYREADDLF KDTGRHQDPE GGGEPAQKPR PAPPPTAVSG AMWAVAPNSG AGAGGGAFWM 180 QPAWAFGAGN TVQAPLQFIS RSSFPGGMGD TNLGMLAGLN SCGRSTGGEQ QQHQHQQQPQ 240 QEEEEGQPPE MDQHRRGSTS AGANGHEAGH SAASPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361002	0.0	AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194047.1	0.0	transcription factor PCF3-like
Swissprot	Q53PH2	9e-81	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3B6HZ67	0.0	A0A3B6HZ67_WHEAT; Uncharacterized protein
STRING	Traes_4AL_E57587E16.1	0.0	(Triticum aestivum)
STRING	Traes_4DS_9C2FD9F381.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	6e-37	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]